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  Re: NCBI -> SwissProt mappings

  Thu, January 13, 2005 - 12:48 PM

  ???
  
  Not as trivial as it sounds...

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• James

  

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  Re: NCBI -> SwissProt mappings

  Fri, January 14, 2005 - 5:30 PM

  i can't think of a way right now, i just had a proteomics class and i'm not sure we covered that. i would think there would be a concentrator website/interface somewhere that would represent both though....you should probably just email ncbi and ask them:
  
  gb-admin@ncbi.nlm.nih.gov
  
  M.

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    Re: NCBI -> SwissProt mappings

    Tue, January 18, 2005 - 12:38 PM

    There is a file on NCBI's website 'gene2accession', that has mappings for some genes/proteins. Also, the 'nr' protein file, used to have both gis and swissprot accessions in the header lines. This doesn't seem to be the case any longer.
    
    One could always just blast nr to swissprot, but it seems a trivial enough thing to want that someone might have put it all in a file for all to download.
    

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      Re: NCBI -> SwissProt mappings

      Thu, November 10, 2005 - 4:16 PM

      i just spoke to someone else who had this same problem.
      
      apparently this problem is too trival for anyone to actually devote time or research funds to do. utterly unpublishable. but too difficult to knock off with a quick perl script. thus no one's done it.

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Topic	Author	Replies	Last Post
hey biogeeks :)	James	2	January 31, 2006
correlated mutations	Unsubscribed	0	November 14, 2005
first step	Combi	5	October 14, 2005
bioinformatics job in seattle	niehjla	7	October 9, 2005
phylogenetic trees	James	0	August 26, 2004